Class: ChemicalEntity

Any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer etc., identifiable as a separately distinguishable entity.

URI: CHEBI:23367

classDiagram class ChemicalEntity click ChemicalEntity href "../ChemicalEntity" MaterialEntity <|-- ChemicalEntity click MaterialEntity href "../MaterialEntity" ChemicalEntity : description ChemicalEntity : id ChemicalEntity : iupac_name ChemicalEntity : name

Inheritance

MaterialEntity [ MinimalMetadataMixin]
- ChemicalEntity

Slots

Name	Cardinality and Range	Description	Inheritance
iupac_name	0..1 String	A property to provide the IUPAC name of a Chemical Substance or Chemical Enti...	direct
id	1 Uriorcurie	A property to provide the unique identifier for a thing	MinimalMetadataMixin
name	0..1 String	A property to provide the human-readable name for a thing	MinimalMetadataMixin
description	0..1 String	A property to provide the human-readable description for a thing	MinimalMetadataMixin

Comments

This is actually mapped to CHEBI:molecular entity (CHEBI:23367), from which we just copied the definition into our description. We did so to be able to reuse the label Chemical Entity. We do not use (ignore) the chemical entity class from CHEBI as this is only a grouping class, and chemical entity is rather that which constitutes a chemical substance
There was the issue with theoretical chemist postulating chemical entities that are not physical existing --> write/ask in the OBO or BFO discuss list?

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/NFDI4Chem/MIChI

Mappings

Mapping Type	Mapped Value
self	CHEBI:23367
native	michi:ChemicalEntity

LinkML Source

Direct

name: ChemicalEntity
description: Any constitutionally or isotopically distinct atom, molecule, ion, ion
  pair, radical, radical ion, complex, conformer etc., identifiable as a separately
  distinguishable entity.
comments:
- This is actually mapped to CHEBI:molecular entity (CHEBI:23367), from which we just
  copied the definition into our description. We did so to be able to reuse the label
  Chemical Entity. We do not use (ignore) the chemical entity class from CHEBI as
  this is only a grouping class, and chemical entity is rather that which constitutes
  a chemical substance
- There was the issue with theoretical chemist postulating chemical entities that
  are not physical existing --> write/ask in the OBO or BFO discuss list?
from_schema: https://w3id.org/NFDI4Chem/MIChI
is_a: MaterialEntity
slots:
- iupac_name
class_uri: CHEBI:23367

Induced

name: ChemicalEntity
description: Any constitutionally or isotopically distinct atom, molecule, ion, ion
  pair, radical, radical ion, complex, conformer etc., identifiable as a separately
  distinguishable entity.
comments:
- This is actually mapped to CHEBI:molecular entity (CHEBI:23367), from which we just
  copied the definition into our description. We did so to be able to reuse the label
  Chemical Entity. We do not use (ignore) the chemical entity class from CHEBI as
  this is only a grouping class, and chemical entity is rather that which constitutes
  a chemical substance
- There was the issue with theoretical chemist postulating chemical entities that
  are not physical existing --> write/ask in the OBO or BFO discuss list?
from_schema: https://w3id.org/NFDI4Chem/MIChI
is_a: MaterialEntity
attributes:
  iupac_name:
    name: iupac_name
    description: A property to provide the IUPAC name of a Chemical Substance or Chemical
      Entity.
    from_schema: https://w3id.org/NFDI4Chem/MIChI
    rank: 1000
    alias: iupac_name
    owner: ChemicalEntity
    domain_of:
    - ChemicalEntity
    - ChemicalSubstance
    range: string
  id:
    name: id
    description: A property to provide the unique identifier for a thing
    from_schema: https://w3id.org/NFDI4Chem/MIChI
    rank: 1000
    slot_uri: dct:identifier
    identifier: true
    alias: id
    owner: ChemicalEntity
    domain_of:
    - MinimalMetadataMixin
    range: uriorcurie
    required: true
  name:
    name: name
    description: A property to provide the human-readable name for a thing
    from_schema: https://w3id.org/NFDI4Chem/MIChI
    rank: 1000
    slot_uri: dct:title
    alias: name
    owner: ChemicalEntity
    domain_of:
    - MinimalMetadataMixin
    range: string
  description:
    name: description
    description: A property to provide the human-readable description for a thing
    from_schema: https://w3id.org/NFDI4Chem/MIChI
    rank: 1000
    slot_uri: dct:description
    alias: description
    owner: ChemicalEntity
    domain_of:
    - MinimalMetadataMixin
    range: string
class_uri: CHEBI:23367