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Class: Reactor

A reactor is a container for controlling a biological or chemical reaction or process.

URI: AFE:0000153

classDiagram class Reactor click Reactor href "../Reactor/" Materialistic <|-- Reactor click Materialistic href "../Materialistic/" Device <|-- Reactor click Device href "../Device/" Reactor : alternative_label Reactor : description Reactor : has_density Reactor --> "* _recommended_" Density : has_density click Density href "../Density/" Reactor : has_mass Reactor --> "* _recommended_" Mass : has_mass click Mass href "../Mass/" Reactor : has_part Reactor --> "*" Device : has_part click Device href "../Device/" Reactor : has_physical_state Reactor --> "0..1" PhysicalStateEnum : has_physical_state click PhysicalStateEnum href "../PhysicalStateEnum/" Reactor : has_pressure Reactor --> "* _recommended_" Pressure : has_pressure click Pressure href "../Pressure/" Reactor : has_qualitative_attribute Reactor --> "* _recommended_" QualitativeAttribute : has_qualitative_attribute click QualitativeAttribute href "../QualitativeAttribute/" Reactor : has_quantitative_attribute Reactor --> "* _recommended_" QuantitativeAttribute : has_quantitative_attribute click QuantitativeAttribute href "../QuantitativeAttribute/" Reactor : has_temperature Reactor --> "* _recommended_" Temperature : has_temperature click Temperature href "../Temperature/" Reactor : has_volume Reactor --> "* _recommended_" Volume : has_volume click Volume href "../Volume/" Reactor : id Reactor : other_identifier Reactor --> "*" Identifier : other_identifier click Identifier href "../Identifier/" Reactor : part_of Reactor --> "*" AgenticEntity : part_of click AgenticEntity href "../AgenticEntity/" Reactor : rdf_type Reactor --> "0..1 _recommended_" DefinedTerm : rdf_type click DefinedTerm href "../DefinedTerm/" Reactor : title Reactor : type Reactor --> "0..1" DefinedTerm : type click DefinedTerm href "../DefinedTerm/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
alternative_label 0..1
String		 The slot to specify an alternative label, name or title for a MaterialEntity Materialistic
has_physical_state 0..1
PhysicalStateEnum		 The slot to specify the physical state of a MaterialEntity Materialistic
has_temperature * recommended
Temperature		 The slot to provide the Temperature of a MaterialEntity Materialistic
has_mass * recommended
Mass		 The slot to provide the Mass of a MaterialEntity Materialistic
has_volume * recommended
Volume		 The slot to provide the Volume of a MaterialEntity Materialistic
has_density * recommended
Density		 The slot to provide the Density of a MaterialEntity Materialistic
has_pressure * recommended
Pressure		 The slot to provide the Pressure of a MaterialEntity Materialistic
id 1
Uriorcurie		 A slot to provide an URI for an entity within this schema AgenticEntity
title 0..1
String		 This slot is described in more detail within the class in which it is used AgenticEntity
description 0..1
String		 This slot is described in more detail within the class in which it is used AgenticEntity
other_identifier *
Identifier		 A slot to provide a secondary identifier for a Device AgenticEntity
has_qualitative_attribute * recommended
QualitativeAttribute		 The slot to relate a qualitative attribute to an EvaluatedEntity, EvaluatedAc... AgenticEntity
has_quantitative_attribute * recommended
QuantitativeAttribute		 The slot to relate a quantitative attribute to an EvaluatedEntity, EvaluatedA... AgenticEntity
has_part *
Device		 The slot to specify parts of a Device that are themselves Devices AgenticEntity
part_of *
AgenticEntity		 The slot to provide the AgenticEntity of which theAgenticEntity is a part AgenticEntity
type 0..1
DefinedTerm		 This slot is described in more detail within the class in which it is used ClassifierMixin
rdf_type 0..1 recommended
DefinedTerm		 The slot to specify the ontology class that is instantiated by an entity ClassifierMixin

Usages

used by used in type used
ChemicalReaction used_reactor range Reactor

Identifier and Mapping Information

Schema Source

  • from schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml

Mappings

Mapping Type Mapped Value
self AFE:0000153
native nmr_dcat_ap:Reactor
exact VOC4CAT:0007017

LinkML Source

Direct

name: Reactor
description: A reactor is a container for controlling a biological or chemical reaction
  or process.
from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
exact_mappings:
- VOC4CAT:0007017
is_a: Device
mixins:
- Materialistic
class_uri: AFE:0000153

Induced

name: Reactor
description: A reactor is a container for controlling a biological or chemical reaction
  or process.
from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
exact_mappings:
- VOC4CAT:0007017
is_a: Device
mixins:
- Materialistic
attributes:
  alternative_label:
    name: alternative_label
    description: The slot to specify an alternative label, name or title for a MaterialEntity.
    todos:
    - Should probably rather declared on Entity or in some common metadata mixin instead.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: skos:altLabel
    alias: alternative_label
    owner: Reactor
    domain_of:
    - Materialistic
    range: string
  has_physical_state:
    name: has_physical_state
    description: The slot to specify the physical state of a MaterialEntity.
    todos:
    - Find out how to make this a subproperty of has_qualitative_attribute, as it
      currently throws the error 'physical_state enumerations cannot be inlined' due
      to the fact that we are using an enum here.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: SIO:000008
    alias: has_physical_state
    owner: Reactor
    domain_of:
    - Materialistic
    range: PhysicalStateEnum
    multivalued: false
    inlined: false
  has_temperature:
    name: has_temperature
    description: The slot to provide the Temperature of a MaterialEntity.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_temperature
    owner: Reactor
    domain_of:
    - Materialistic
    - ChemicalReaction
    range: Temperature
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_mass:
    name: has_mass
    description: The slot to provide the Mass of a MaterialEntity.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_mass
    owner: Reactor
    domain_of:
    - Materialistic
    range: Mass
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_volume:
    name: has_volume
    description: The slot to provide the Volume of a MaterialEntity.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_volume
    owner: Reactor
    domain_of:
    - Materialistic
    range: Volume
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_density:
    name: has_density
    description: The slot to provide the Density of a MaterialEntity.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_density
    owner: Reactor
    domain_of:
    - Materialistic
    range: Density
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_pressure:
    name: has_pressure
    description: The slot to provide the Pressure of a MaterialEntity.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    alias: has_pressure
    owner: Reactor
    domain_of:
    - Materialistic
    - ChemicalReaction
    range: Pressure
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A slot to provide an URI for an entity within this schema.
    in_subset:
    - domain_agnostic_core
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    identifier: true
    alias: id
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - DefinedTerm
    - Document
    - Entity
    - LegalResource
    - LicenseDocument
    - Resource
    range: uriorcurie
    required: true
  title:
    name: title
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:title
    alias: title
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - DefinedTerm
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  description:
    name: description
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:description
    alias: description
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  other_identifier:
    name: other_identifier
    description: A slot to provide a secondary identifier for a Device.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: adms:identifier
    alias: other_identifier
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - Entity
    range: Identifier
    required: false
    multivalued: true
    inlined_as_list: true
  has_qualitative_attribute:
    name: has_qualitative_attribute
    description: The slot to relate a qualitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    in_subset:
    - domain_agnostic_core
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_qualitative_attribute
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QualitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_quantitative_attribute:
    name: has_quantitative_attribute
    description: The slot to relate a quantitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    in_subset:
    - domain_agnostic_core
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:relation
    alias: has_quantitative_attribute
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QuantitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_part:
    name: has_part
    description: The slot to specify parts of a Device that are themselves Devices.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:hasPart
    alias: has_part
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Catalogue
    - Entity
    range: Device
    multivalued: true
    inlined: true
    inlined_as_list: true
  part_of:
    name: part_of
    description: The slot to provide the AgenticEntity of which theAgenticEntity is
      a part.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:isPartOf
    alias: part_of
    owner: Reactor
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    inverse: has_part
    range: AgenticEntity
    multivalued: true
    inlined_as_list: true
  type:
    name: type
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: dcterms:type
    alias: type
    owner: Reactor
    domain_of:
    - Agent
    - ClassifierMixin
    - Dataset
    - LicenseDocument
    range: DefinedTerm
    inlined: true
  rdf_type:
    name: rdf_type
    description: The slot to specify the ontology class that is instantiated by an
      entity.
    in_subset:
    - domain_agnostic_core
    from_schema: https://NFDI4Chem.github.io/nmr-dcat-ap/nmr_dcat_ap.yaml
    rank: 1000
    slot_uri: rdf:type
    alias: rdf_type
    owner: Reactor
    domain_of:
    - ClassifierMixin
    range: DefinedTerm
    recommended: true
    inlined: true
class_uri: AFE:0000153