Skip to main content

Docker Installation

  1. Pulling the docker image: docker pull docker pull lincoln1010/mass_spectrometry_file_converter:v1

  2. Running the container: docker run --privileged -d -ti --name < name of the container > -p 5000:5000 lincoln1010/mass_spectrometry_file_converter:v1.0

  3. Enabling the docker in docker (which is necessary): docker exec < name of the container > dockerd >/tmp/docker.stdout 2>/tmp/docker.stderr &

  4. Copy extra parameters on config.txt file:

    • a : create a config.txt file with content , for example, --mzXML (without any indentation)
    • b : docker cp < path to your config.txt file > < name of the container >:/app/config.txt (copying the config.txt file to /app/config.txt inside the container)

  5. The URL will be available on http://localhost:5000/api-docs# with RESTAPI