Class: MaterialMSSample

A mass spectrometry sample of unknown composition (material) prepared for and investigated by Mass Spectrometry (MS).

__

 classDiagram
    class MaterialMSSample
    click MaterialMSSample href "../MaterialMSSample/"
      MSSample <|-- MaterialMSSample
        click MSSample href "../MSSample/"

      MaterialMSSample : alternative_label

      MaterialMSSample : derived_from





        MaterialMSSample --> "0..1" Entity : derived_from
        click Entity href "../Entity/"



      MaterialMSSample : description

      MaterialMSSample : has_density





        MaterialMSSample --> "* _recommended_" Density : has_density
        click Density href "../Density/"



      MaterialMSSample : has_mass





        MaterialMSSample --> "* _recommended_" Mass : has_mass
        click Mass href "../Mass/"



      MaterialMSSample : has_part





        MaterialMSSample --> "*" Entity : has_part
        click Entity href "../Entity/"



      MaterialMSSample : has_physical_state





        MaterialMSSample --> "0..1" PhysicalStateEnum : has_physical_state
        click PhysicalStateEnum href "../PhysicalStateEnum/"



      MaterialMSSample : has_pressure





        MaterialMSSample --> "* _recommended_" Pressure : has_pressure
        click Pressure href "../Pressure/"



      MaterialMSSample : has_qualitative_attribute





        MaterialMSSample --> "* _recommended_" QualitativeAttribute : has_qualitative_attribute
        click QualitativeAttribute href "../QualitativeAttribute/"



      MaterialMSSample : has_quantitative_attribute





        MaterialMSSample --> "* _recommended_" QuantitativeAttribute : has_quantitative_attribute
        click QuantitativeAttribute href "../QuantitativeAttribute/"



      MaterialMSSample : has_temperature





        MaterialMSSample --> "* _recommended_" Temperature : has_temperature
        click Temperature href "../Temperature/"



      MaterialMSSample : has_volume





        MaterialMSSample --> "* _recommended_" Volume : has_volume
        click Volume href "../Volume/"



      MaterialMSSample : id

      MaterialMSSample : injection_volume





        MaterialMSSample --> "0..1" Volume : injection_volume
        click Volume href "../Volume/"



      MaterialMSSample : other_identifier





        MaterialMSSample --> "*" Identifier : other_identifier
        click Identifier href "../Identifier/"



      MaterialMSSample : part_of





        MaterialMSSample --> "*" Entity : part_of
        click Entity href "../Entity/"



      MaterialMSSample : rdf_type





        MaterialMSSample --> "0..1 _recommended_" DefinedTerm : rdf_type
        click DefinedTerm href "../DefinedTerm/"



      MaterialMSSample : solvent





        MaterialMSSample --> "0..1" ChemicalEntity : solvent
        click ChemicalEntity href "../ChemicalEntity/"



      MaterialMSSample : title

      MaterialMSSample : type





        MaterialMSSample --> "0..1" DefinedTerm : type
        click DefinedTerm href "../DefinedTerm/"



      MaterialMSSample : was_generated_by





        MaterialMSSample --> "*" Activity : was_generated_by
        click Activity href "../Activity/"

Inheritance

Entity [ ClassifierMixin]
- EvaluatedEntity
  - MaterialSample [ MaterialisticMixin]
    - MSSample
      - MaterialMSSample

Class Properties

Property	Value
Class URI	MS:1000457

Slots

Name	Cardinality and Range	Description	Inheritance
solvent	0..1 ChemicalEntity	A solvent used in liquid mass spectrometry (MS) for sample preparation.	MSSample
injection_volume	0..1 Volume	The volume of liquid sample injected into the mass spectrometer for analysis.	MSSample
derived_from	0..1 Entity	The slot to specify the MaterialEntity or MaterialSample from which the MaterialSample was created.	MaterialSample
alternative_label	0..1 String	The slot to specify an alternative label, name or title for a MaterialEntity.	MaterialisticMixin
has_physical_state	0..1 PhysicalStateEnum	The slot to specify the physical state of a MaterialEntity.	MaterialisticMixin
has_temperature	* recommended Temperature	The slot to provide the Temperature of a MaterialEntity or an Activity, whereas the temperature of the Activity is ontologically rooted in the temperature of the material entities that participate in the Activity.	MaterialisticMixin
has_mass	* recommended Mass	The slot to provide the Mass of a MaterialEntity.	MaterialisticMixin
has_volume	* recommended Volume	The slot to provide the Volume of a MaterialEntity.	MaterialisticMixin
has_density	* recommended Density	The slot to provide the Density of a MaterialEntity.	MaterialisticMixin
has_pressure	* recommended Pressure	The slot to provide data about the pressure of a MaterialEntity or an Activity, whereas the Pressure of an Activity is ontologically a quality borne by the material entities participating in the Activity.	MaterialisticMixin
was_generated_by	* Activity	A slot to provide the Activity which created the EvaluatedEntity.	EvaluatedEntity
title	0..1 String	The slot to provide a title for the EvaluatedEntity.	Entity
description	0..1 String	The slot to provide a description for the EvaluatedEntity.	Entity
id	1 Uriorcurie	Sample ID: The URI identifying a sample and leading to the sample history including its preparation.	Entity
other_identifier	* Identifier	A slot to provide a secondary identifier of the EvaluatedEntity.	Entity
has_qualitative_attribute	* recommended QualitativeAttribute	The slot to relate a qualitative attribute to an EvaluatedEntity, EvaluatedActivity or AgenticEntity	Entity
has_quantitative_attribute	* recommended QuantitativeAttribute	The slot to relate a quantitative attribute to an EvaluatedEntity, EvaluatedActivity or AgenticEntity	Entity
has_part	* Entity	A slot to provide a part of the Entity.	Entity
part_of	* Entity	The slot to specify an Entity of which the Entity is a part.	Entity
type	0..1 DefinedTerm	This slot is described in more detail within the class in which it is used.	ClassifierMixin
rdf_type	0..1 recommended DefinedTerm	The slot to specify the ontology class that is instantiated by an entity.	ClassifierMixin

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/NFDI4Chem/ms-dcat-ap

Mappings

Mapping Type	Mapped Value
self	MS:1000457
native	ms_dcat_ap:MaterialMSSample

LinkML Source

Direct

name: MaterialMSSample
description: 'A mass spectrometry sample of unknown composition (material) prepared
  for and investigated by Mass Spectrometry (MS).

  '
from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
is_a: MSSample
slot_usage:
  id:
    name: id
    description: 'Sample ID: The URI identifying a sample and leading to the sample
      history including its preparation.

      '
    required: true
class_uri: MS:1000457

Induced

name: MaterialMSSample
description: 'A mass spectrometry sample of unknown composition (material) prepared
  for and investigated by Mass Spectrometry (MS).

  '
from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
is_a: MSSample
slot_usage:
  id:
    name: id
    description: 'Sample ID: The URI identifying a sample and leading to the sample
      history including its preparation.

      '
    required: true
attributes:
  solvent:
    name: solvent
    description: 'A solvent used in liquid mass spectrometry (MS) for sample preparation.

      '
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    owner: MaterialMSSample
    domain_of:
    - MSSample
    range: ChemicalEntity
  injection_volume:
    name: injection_volume
    description: 'The volume of liquid sample injected into the mass spectrometer
      for analysis.

      '
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    owner: MaterialMSSample
    domain_of:
    - MSSample
    range: Volume
  derived_from:
    name: derived_from
    description: The slot to specify the MaterialEntity or MaterialSample from which
      the MaterialSample was created.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    exact_mappings:
    - SIO:000244
    close_mappings:
    - BFO:0000050
    - dcterms:partOf
    rank: 1000
    slot_uri: prov:wasDerivedFrom
    owner: MaterialMSSample
    domain_of:
    - MaterialSample
    range: Entity
    inlined: true
    inlined_as_list: false
  alternative_label:
    name: alternative_label
    description: The slot to specify an alternative label, name or title for a MaterialEntity.
    todos:
    - Should probably rather declared on Entity or in some common metadata mixin instead.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: skos:altLabel
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    range: string
  has_physical_state:
    name: has_physical_state
    description: The slot to specify the physical state of a MaterialEntity.
    todos:
    - Find out how to make this a subproperty of has_qualitative_attribute, as it
      currently throws the error 'physical_state enumerations cannot be inlined' due
      to the fact that we are using an enum here.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    range: PhysicalStateEnum
    multivalued: false
    inlined: false
  has_temperature:
    name: has_temperature
    description: The slot to provide the Temperature of a MaterialEntity or an Activity,
      whereas the temperature of the Activity is ontologically rooted in the temperature
      of the material entities that participate in the Activity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    - ChemicalReaction
    range: Temperature
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_mass:
    name: has_mass
    description: The slot to provide the Mass of a MaterialEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    range: Mass
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_volume:
    name: has_volume
    description: The slot to provide the Volume of a MaterialEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    range: Volume
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_density:
    name: has_density
    description: The slot to provide the Density of a MaterialEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    range: Density
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_pressure:
    name: has_pressure
    description: The slot to provide data about the pressure of a MaterialEntity or
      an Activity, whereas the Pressure of an Activity is ontologically a quality
      borne by the material entities participating in the Activity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    is_a: has_quantitative_attribute
    slot_uri: SIO:000008
    owner: MaterialMSSample
    domain_of:
    - MaterialisticMixin
    - ChemicalReaction
    range: Pressure
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  was_generated_by:
    name: was_generated_by
    description: A slot to provide the Activity which created the EvaluatedEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    owner: MaterialMSSample
    domain_of:
    - Dataset
    - EvaluatedEntity
    range: Activity
    multivalued: true
    inlined: true
    inlined_as_list: true
  title:
    name: title
    description: The slot to provide a title for the EvaluatedEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:title
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - DefinedTerm
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  description:
    name: description
    description: The slot to provide a description for the EvaluatedEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:description
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Any
    - Attribution
    - Catalogue
    - CatalogueRecord
    - ChecksumAlgorithm
    - Concept
    - ConceptScheme
    - DataService
    - Dataset
    - DatasetSeries
    - Distribution
    - Document
    - Entity
    - Frequency
    - Geometry
    - Identifier
    - LegalResource
    - LicenseDocument
    - LinguisticSystem
    - MediaType
    - MediaTypeOrExtent
    - PeriodOfTime
    - Plan
    - Policy
    - ProvenanceStatement
    - QualitativeAttribute
    - QuantitativeAttribute
    - Resource
    - RightsStatement
    - Role
    - Standard
    - SupportiveEntity
    - Surrounding
    - TimeInstant
    range: string
  id:
    name: id
    description: 'Sample ID: The URI identifying a sample and leading to the sample
      history including its preparation.

      '
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    identifier: true
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - DefinedTerm
    - Document
    - Entity
    - LegalResource
    - LicenseDocument
    - Resource
    range: uriorcurie
    required: true
  other_identifier:
    name: other_identifier
    description: A slot to provide a secondary identifier of the EvaluatedEntity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: adms:identifier
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Dataset
    - Entity
    range: Identifier
    required: false
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_qualitative_attribute:
    name: has_qualitative_attribute
    description: The slot to relate a qualitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:relation
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QualitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_quantitative_attribute:
    name: has_quantitative_attribute
    description: The slot to relate a quantitative attribute to an EvaluatedEntity,
      EvaluatedActivity or AgenticEntity
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:relation
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    range: QuantitativeAttribute
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  has_part:
    name: has_part
    description: A slot to provide a part of the Entity.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:hasPart
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Catalogue
    - Entity
    range: Entity
    multivalued: true
    inlined: true
    inlined_as_list: true
  part_of:
    name: part_of
    description: The slot to specify an Entity of which the Entity is a part.
    notes:
    - not in DCAT-AP
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:isPartOf
    owner: MaterialMSSample
    domain_of:
    - Activity
    - AgenticEntity
    - Entity
    inverse: has_part
    range: Entity
    multivalued: true
    inlined: true
    inlined_as_list: true
  type:
    name: type
    description: This slot is described in more detail within the class in which it
      is used.
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: dcterms:type
    owner: MaterialMSSample
    domain_of:
    - Agent
    - ClassifierMixin
    - Dataset
    - LicenseDocument
    range: DefinedTerm
    inlined: true
  rdf_type:
    name: rdf_type
    description: The slot to specify the ontology class that is instantiated by an
      entity.
    in_subset:
    - domain_agnostic_core
    from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
    rank: 1000
    slot_uri: rdf:type
    owner: MaterialMSSample
    domain_of:
    - ClassifierMixin
    range: DefinedTerm
    recommended: true
    inlined: true
class_uri: MS:1000457