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Slot: has_physical_state

The slot to specify the physical state of a MaterialEntity.

URI: SIO:000008 Alias: has_physical_state

Applicable Classes

Name Description Modifies Slot
SubstanceMSSample A mass spectrometry sample of known composition (substance) prepared for and investigated by Mass Spectrometry (MS). no
PolymerMixin A LinkML mixin used to pass down properties common to all chemical substances that are composed of macromolecules of different kinds and which may be differentiated by composition, length, degree of branching etc.. no
MaterialMSSample A mass spectrometry sample of unknown composition (material) prepared for and investigated by Mass Spectrometry (MS). no
Reactor A reactor is a container for controlling a biological or chemical reaction or process. no
ChemicalSubstanceMixin A LinkML mixin used to pass down properties common to all material entities that are described in a chemical context via being composed of chemical entities (e.g. atom, molecule, ion, ion pair, radical, complex, conformer etc., ) of the same type or of different types. no
PolymerSample A SubstanceSample derived from a Polymer. no
StartingMaterial A ChemicalSubstance with that has a starting material role in a synthesis. no
ChemicalProduct A chemical substance that is produced by a ChemicalReaction. no
MaterialEntity A material is an Entity that has some portion of matter as proper part. no
SubstanceSample A MaterialSample derived from a chemical substance that is of interest in an analytical procedure. no
DissolvingSubstance A liquid ChemicalSubstance that dissolves or that is capable of dissolving a ChemicalSubstance. no
MaterialisticMixin A LinkML mixin used to pass down properties common to all material entities. It is needed for example to have MaterialSample have the same properties as MaterialEntity, although it is defined as a subclass of EvaluatedEntity. no
Reagent A ChemicalSubstance that is consumed or transformed in a ChemicalReaction. no
Catalyst A ChemicalSubstance or MaterialEntity that initiates or accelerates a ChemicalReaction without itself being affected. no
MaterialSample A Sample that was derived from a previous MaterialSample or some other kind of MaterialEntity. no
MSSample Abstract base class for mass spectrometry samples, providing common slots such as solvent and injection volume. Concrete subclasses are SubstanceMSSample (known composition) and MaterialMSSample (unknown composition). no

Properties

Type and Range

Property Value
Range PhysicalStateEnum
Domain Of MaterialisticMixin
Slot URI SIO:000008

Cardinality and Requirements

Property Value

TODOs

  • Find out how to make this a subproperty of has_qualitative_attribute, as it currently throws the error 'physical_state enumerations cannot be inlined' due to the fact that we are using an enum here.

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/NFDI4Chem/ms-dcat-ap

Mappings

Mapping Type Mapped Value
self SIO:000008
native https://w3id.org/NFDI4Chem/ms-dcat-ap/has_physical_state

LinkML Source

name: has_physical_state
description: The slot to specify the physical state of a MaterialEntity.
todos:
- Find out how to make this a subproperty of has_qualitative_attribute, as it currently
  throws the error 'physical_state enumerations cannot be inlined' due to the fact
  that we are using an enum here.
from_schema: https://w3id.org/NFDI4Chem/ms-dcat-ap
rank: 1000
slot_uri: SIO:000008
alias: has_physical_state
domain_of:
- MaterialisticMixin
range: PhysicalStateEnum
multivalued: false
inlined: false